ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q35A2 - ECOD Domain | ECOD

ECOD/Domains/e4q35A2

e4q35A2

UID: 001313005

RepresentativePDB

Range: A:226-784
PDB: 4Q35 chain A(all domains)
UniProt: Q83SQ0 (all domains)
Gene: lptD

Molecule: LPS-assembly protein LptD

3D Structure

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Related Domains

Browse other domains in LptD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupLPS-assembly protein LptD(5084.10)

TT-groupLPS-assembly protein LptD(5084.10.1)

FFamilyLptD(5084.10.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives ((Hydroxyethyloxy)Tri(Ethyloxy)Octane, Dodecyldimethylamine N-oxide, Sulfate ion)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233
Dodecyldimethylamine N-oxideLDA
DrugBank DB04147

Pfam Families

LPS transport system D

ClanCL0193MBB

External Links

ECOD PDB View: 4Q35 RCSB PDB: 4Q35 PDBe: 4Q35 UniProt: Q83SQ0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.