ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4qhjB1 - ECOD Domain | ECOD

ECOD/Domains/e4qhjB1

e4qhjB1

UID: 001315103

PDB

Range: B:1-108
PDB: 4QHJ chain B(all domains)
UniProt: Q58610 (all domains)
Gene: MJ1213

Molecule: Uncharacterized protein MJ1213

3D Structure

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Related Domains

Browse other domains in Peptidase_M56 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M56(2498.1.1.26)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
Glycerin

Pfam Families

PF05569Peptidase_M56

BlaR1 peptidase M56

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4QHJ RCSB PDB: 4QHJ PDBe: 4QHJ UniProt: Q58610

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.