ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4obwD1 - ECOD Domain | ECOD

ECOD/Domains/e4obwD1

e4obwD1

UID: 001320639

RepresentativePDB

Range: D:73-307
PDB: 4OBW chain D(all domains)
UniProt: P49017 (all domains)
Gene: COQ5

Molecule: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial

3D Structure

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Related Domains

Browse other domains in Ubie_methyltran →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyUbie_methyltran(2003.1.5.8)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Tris(Hydroxyethyl)AminomethaneTAM
drugDrugBank DB04237

Shown in the structure viewer.

Pfam Families

PF01209Ubie_methyltran

ubiE/COQ5 methyltransferase family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4OBW RCSB PDB: 4OBW PDBe: 4OBW UniProt: P49017

Downloads

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Drug annotations from DrugDomain.