ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4pd8A1 - ECOD Domain | ECOD

ECOD/Domains/e4pd8A1

e4pd8A1

UID: 001322925

PDB

Range: A:2-416
PDB: 4PD8 chain A(all domains)
UniProt: Q9KPL5 (all domains)
Gene: VC_2352

Molecule: NupC family protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Nucleos_tra2_N,Nucleos_tra2_C,Gate →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupConcentrative nucleoside transporter(3415)

HH-groupConcentrative nucleoside transporter(3415.1)

TT-groupConcentrative nucleoside transporter(3415.1.1)

FFamilyNucleos_tra2_N,Nucleos_tra2_C,Gate(3415.1.1.1)

Ligands

in contact, ≤ 4 Å

Decyl-beta-d-maltopyranosideDMU
Sodium ionNA
metal
6-methyl-3-(beta-D-ribofuranosyl)-3,7-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-oneP0C

Shown in the structure viewer.

Pfam Families

PF01773Nucleos_tra2_N

Na+ dependent nucleoside transporter N-terminus

PF07662Nucleos_tra2_C

Na+ dependent nucleoside transporter C-terminus

Nucleoside recognition

External Links

ECOD PDB View: 4PD8 RCSB PDB: 4PD8 PDBe: 4PD8 UniProt: Q9KPL5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.