ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yc2B2 - ECOD Domain | ECOD

ECOD/Domains/e1yc2B2

e1yc2B2

UID: 000133042

PDB

Range: B:1-119,B:163-252
PDB: 1YC2 chain B(all domains)
UniProt: O30124 (all domains)
Gene: cobB2

Molecule: NAD-dependent deacetylase 2

3D Structure

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Related Domains

Browse other domains in SIR2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupDHS-like NAD/FAD-binding domain(2003.1.4)

FFamilySIR2(2003.1.4.5)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
NicotinamideNCA
drugDrugBank DB02701
Zinc ion

Pfam Families

Sir2 family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1YC2 RCSB PDB: 1YC2 PDBe: 1YC2 UniProt: O30124

Downloads

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metal

+ 3 additives (Sulfate ion, Nonaethylene glycol, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
Nonaethylene glycol2PE
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.