ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3g1zA1 - ECOD Domain | ECOD

ECOD/Domains/e3g1zA1

e3g1zA1

UID: 000133984

PDB

Range: A:5-325
PDB: 3G1Z chain A(all domains)
UniProt: Q9ZJ12 (all domains)
Gene: epmA

Molecule: Putative lysyl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 3G1Z RCSB PDB: 3G1Z PDBe: 3G1Z UniProt: Q9ZJ12

Downloads

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Drug annotations from DrugDomain.