ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4p5mF1 - ECOD Domain | ECOD

ECOD/Domains/e4p5mF1

e4p5mF1

UID: 001346551

PDB

Range: F:79-188
PDB: 4P5M chain F(all domains)
UniProt: Q5EP54 (all domains)
Gene: HLA-DPB1

Molecule: peptide,HLA class II histocompatibility antigen, DP beta 1 chain

3D Structure

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Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 4P5M RCSB PDB: 4P5M PDBe: 4P5M UniProt: Q5EP54

Downloads

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