ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4p5mH1 - ECOD Domain | ECOD

ECOD/Domains/e4p5mH1

e4p5mH1

UID: 001346553

PDB

Range: H:79-188
PDB: 4P5M chain H(all domains)
UniProt: Q5EP54 (all domains)
Gene: HLA-DPB1

Molecule: peptide,HLA class II histocompatibility antigen, DP beta 1 chain

3D Structure

Loading viewer...

Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 4P5M RCSB PDB: 4P5M PDBe: 4P5M UniProt: Q5EP54

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure