ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pe5D2 - ECOD Domain | ECOD

ECOD/Domains/e4pe5D2

e4pe5D2

UID: 001347152

PDB

Range: D:540-567,D:602-659,D:821-838
PDB: 4PE5 chain D(all domains)
UniProt: Q00960 (all domains)
Gene: Grin2b

Molecule: Glutamate receptor ionotropic, NMDA 2B

3D Structure

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Related Domains

Browse other domains in Lig_chan →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyLig_chan(5054.1.1.1)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00060Lig_chan

Ligand-gated ion channel

ClanCL0030Ion_channel

External Links

ECOD PDB View: 4PE5 RCSB PDB: 4PE5 PDBe: 4PE5 UniProt: Q00960

Downloads

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