ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3h87C1 - ECOD Domain | ECOD

ECOD/Domains/e3h87C1

e3h87C1

UID: 000134746

PDB

Range: C:2-73
PDB: 3H87 chain C(all domains)
UniProt: O07227 (all domains)
Gene: vapB2

Molecule: Putative uncharacterized protein

3D Structure

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Related Domains

Browse other domains in RHH_1 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupRibbon-helix-helix(101.1.11)

FFamilyRHH_1(101.1.11.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metalwithin 5 Å only

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL
DrugBank DB09462
Imidazole

Pfam Families

Ribbon-helix-helix protein, copG family

ClanCL0057Met_repress

External Links

ECOD PDB View: 3H87 RCSB PDB: 3H87 PDBe: 3H87 UniProt: O07227

Downloads

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DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.