ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ms1A1 - ECOD Domain | ECOD

ECOD/Domains/e2ms1A1

e2ms1A1

UID: 001348637

PDB

Range: A:1-55
PDB: 2MS1 chain A(all domains)
UniProt: P03355 (all domains)
Gene: gag-pol

Molecule: Nucleocapsid protein p10

3D Structure

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Related Domains

Browse other domains in zf-CCHC →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupCCHC-type 1 zinc finger(396)

HH-groupRetrovirus zinc finger-related domains(396.1)

TT-groupRetrovirus zinc finger-related domains(396.1.1)

FFamilyzf-CCHC(396.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00098zf-CCHC

Zinc knuckle

ClanCL0511Retroviral_zf

External Links

ECOD PDB View: 2MS1 RCSB PDB: 2MS1 PDBe: 2MS1 UniProt: P03355

Downloads

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