ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4qnuD1 - ECOD Domain | ECOD

ECOD/Domains/e4qnuD1

e4qnuD1

UID: 001349697

PDB

Range: D:1-323
PDB: 4QNU chain D(all domains)
UniProt: A1AC32 (all domains)
Gene: cmoB

Molecule: tRNA (mo5U34)-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_9(2003.1.5.64)

Ligands

in contact, ≤ 4 Å

(2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio]-2-ammoniobutanoateGEK

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PF08003Methyltransf_9

Protein of unknown function (DUF1698)

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4QNU RCSB PDB: 4QNU PDBe: 4QNU UniProt: A1AC32

Downloads

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Drug annotations from DrugDomain.