ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3haxA2 - ECOD Domain | ECOD

ECOD/Domains/e3haxA2

e3haxA2

UID: 000135264

PDB

Range: A:11-251
PDB: 3HAX chain A(all domains)
UniProt: Q7LWY0 (all domains)
Gene: truB

Molecule: Probable tRNA pseudouridine synthase B

3D Structure

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Related Domains

Browse other domains in TruB_N,DKCLD,TruB_C_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyTruB_N,DKCLD,TruB_C_2(304.102.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, Tetraethylene glycol)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOLEDO
Tetraethylene glycolPG4

Pfam Families

TruB family pseudouridylate synthase (N terminal domain)

ClanCL0649PseudoU_synth

DKCLD (NUC011) domain

ClanCL0649PseudoU_synth

PF16198TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

ClanCL0649PseudoU_synth

External Links

ECOD PDB View: 3HAX RCSB PDB: 3HAX PDBe: 3HAX UniProt: Q7LWY0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.