ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3hb3A1 - ECOD Domain | ECOD

ECOD/Domains/e3hb3A1

e3hb3A1

UID: 000135306

PDB

Range: A:17-545
PDB: 3HB3 chain A(all domains)
UniProt: P98002 (all domains)
Gene: ctaDII

Molecule: Cytochrome c oxidase subunit 1-beta

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

Hydrogen peroxidePEO
drugDrugBank DB11091
Calcium ionCA
metal
COPPER (I) IONCU1

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 3HB3 RCSB PDB: 3HB3 PDBe: 3HB3 UniProt: P98002

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Heme-aHEA

MANGANESE (II) IONMN

metal

+ 2 additives (Dodecyldimethylamine N-oxide, Dodecyl-beta-d-maltoside)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.