ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3fd2A1 - ECOD Domain | ECOD

ECOD/Domains/e3fd2A1

e3fd2A1

UID: 000135378

PDB

Range: A:5-178
PDB: 3FD2 chain A(all domains)
UniProt: C0JWR6 (all domains)
Gene: orf170

Molecule: Site-specific DNA endonuclease I-MsoI

3D Structure

Loading viewer...

Related Domains

Browse other domains in LAGLIDADG_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-groupHoming endonucleases(242.1)

TT-groupHoming endonucleases(242.1.1)

FFamilyLAGLIDADG_1(242.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00961LAGLIDADG_1

LAGLIDADG endonuclease

ClanCL0324Homing_endonuc

External Links

ECOD PDB View: 3FD2 RCSB PDB: 3FD2 PDBe: 3FD2 UniProt: C0JWR6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure