ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3h65A2 - ECOD Domain | ECOD

ECOD/Domains/e3h65A2

e3h65A2

UID: 000136253

PDB

Range: A:1-242
PDB: 3H65 chain A(all domains)
UniProt: Q58194 (all domains)
Gene: hmd

Molecule: 5,10-methenyltetrahydromethanopterin hydrogenase

3D Structure

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Related Domains

Browse other domains in HMD_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyHMD_N(2003.1.1.83)

Ligands

in contact, ≤ 4 Å

Carbon monoxideCMO
drugDrugBank DB11588
D-1,4-dithiothreitolDTV
drugDrugBank DB02184
5,10-Dimethylene Tetrahydromethanopterin

Pfam Families

HMD N-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3H65 RCSB PDB: 3H65 PDBe: 3H65 UniProt: Q58194

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03481

5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosineI2C

FE (II) IONFE2

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.