ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4iilA2 - ECOD Domain | ECOD

ECOD/Domains/e4iilA2

e4iilA2

UID: 001382406

RepresentativePDB

Range: A:120-252
PDB: 4IIL chain A(all domains)
UniProt: Q56328 (all domains)
Gene: rfuA

Molecule: Membrane lipoprotein TpN38(b)

3D Structure

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Related Domains

Browse other domains in Bmp →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyBmp(2007.1.2.5)

Ligands

in contact, ≤ 4 Å

RiboflavinRBF
drugDrugBank DB00140
Potassium ionK
metal
Sodium ionNA

Pfam Families

ABC transporter substrate-binding protein PnrA-like

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 4IIL RCSB PDB: 4IIL PDBe: 4IIL UniProt: Q56328

Downloads

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metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.