ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4qmeA3 - ECOD Domain | ECOD

ECOD/Domains/e4qmeA3

e4qmeA3

UID: 001389590

PDB

Range: A:190-439
PDB: 4QME chain A(all domains)
UniProt: Q9JYV4 (all domains)
Gene: pepN

Molecule: Aminopeptidase N

3D Structure

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Related Domains

Browse other domains in Peptidase_M1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M1(2498.1.1.9)

Ligands

in contact, ≤ 4 Å

(2S)-3-[(S)-[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]-2-benzylpropanoic acid37B
Zinc ionZN
metal

+ 3 additives (Glycerin, Sulfate ion, Imidazole)

Glycerin

Pfam Families

PF01433Peptidase_M1

Peptidase family M1 domain

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4QME RCSB PDB: 4QME PDBe: 4QME UniProt: Q9JYV4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

ImidazoleIMD

Shown in the structure viewer. Drug annotations from DrugDomain.