ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3eq1A1 - ECOD Domain | ECOD

ECOD/Domains/e3eq1A1

e3eq1A1

UID: 001391451

PDB

Range: A:239-356
PDB: 3EQ1 chain A(all domains)
UniProt: P08397 (all domains)
Gene: HMBS

Molecule: Porphobilinogen deaminase

3D Structure

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Related Domains

Browse other domains in Porphobil_deamC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupPorphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain(330.4)

TT-groupPorphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain(330.4.1)

FFamilyPorphobil_deamC(330.4.1.1)

Ligands

in contact, ≤ 4 Å

Dipyrromethane CofactorDPM
drugDrugBank DB04517

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF03900Porphobil_deamC

Porphobilinogen deaminase, C-terminal domain

External Links

ECOD PDB View: 3EQ1 RCSB PDB: 3EQ1 PDBe: 3EQ1 UniProt: P08397

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.