ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ihmB1 - ECOD Domain | ECOD

ECOD/Domains/e2ihmB1

e2ihmB1

UID: 001392789

PDB

Range: B:289-365,B:387-496
PDB: 2IHM chain B(all domains)
UniProt: Q9JIW4 (all domains)
Gene: Polm

Molecule: DNA polymerase mu

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_thumb,DNA_pol_B_palm →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyDNA_pol_B_thumb,DNA_pol_B_palm(316.1.1.24)

Ligands

in contact, ≤ 4 Å

2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATED3T
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14791DNA_pol_B_thumb

DNA polymerase beta thumb

PF14792DNA_pol_B_palm

DNA polymerase beta palm

ClanCL0260NTP_transf

External Links

ECOD PDB View: 2IHM RCSB PDB: 2IHM PDBe: 2IHM UniProt: Q9JIW4

Downloads

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