ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3hkwA1 - ECOD Domain | ECOD

ECOD/Domains/e3hkwA1

e3hkwA1

UID: 000139290

PDB

Range: A:358-563
PDB: 3HKW chain A(all domains)
UniProt: P26664 (all domains)

Molecule: NS5B RNA-dependent RNA polymerase

3D Structure

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Related Domains

Browse other domains in RdRP_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRdRP_3(4967.1.1.5)

Ligands

in contact, ≤ 4 Å

(11S)-10-[(2,5-dimethyl-1,3-oxazol-4-yl)carbonyl]-11-{2-fluoro-4-[(2-methylprop-2-en-1-yl)oxy]phenyl}-3,3-dimethyl-2,3,4,5,10,11-hexahydrothiopyrano[3,2-b][1,5]benzodiazepin-6-ol 1,1-dioxideIX6

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

Viral RNA dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 3HKW RCSB PDB: 3HKW PDBe: 3HKW UniProt: P26664

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.