ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4nv3B2 - ECOD Domain | ECOD

ECOD/Domains/e4nv3B2

e4nv3B2

UID: 001394264

PDB

Range: B:53-171,B:304-416
PDB: 4NV3 chain B(all domains)
UniProt: Q3MFZ5 (all domains)
Gene: Ava_0465

Molecule: Amino acid/amide ABC transporter substrate-binding protein, HAAT family

3D Structure

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Related Domains

Browse other domains in Peripla_BP_6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_6(2007.1.2.13)

Ligands

in contact, ≤ 4 Å

ValineVAL
drugDrugBank DB00161
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13458Peripla_BP_6

Periplasmic binding protein

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 4NV3 RCSB PDB: 4NV3 PDBe: 4NV3 UniProt: Q3MFZ5

Downloads

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