ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nzkB1 - ECOD Domain | ECOD

ECOD/Domains/e3nzkB1

e3nzkB1

UID: 001394282

PDB

Range: B:1-300
PDB: 3NZK chain B(all domains)
UniProt: A1JJJ9 (all domains)
Gene: lpxC

Molecule: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in LpxC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyLpxC(212.1.1.15)

Ligands

in contact, ≤ 4 Å

N-{(1S,2R)-2-hydroxy-1-[(hydroxyamino)carbonyl]propyl}-4-{[4-(morpholin-4-ylmethyl)phenyl]ethynyl}benzamideC90
drugDrugBank DB07536
Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

UDP-3-O-acyl N-acetylglycosamine deacetylase

ClanCL0329S5

External Links

ECOD PDB View: 3NZK RCSB PDB: 3NZK PDBe: 3NZK UniProt: A1JJJ9

Downloads

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Drug annotations from DrugDomain.