ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3turB2 - ECOD Domain | ECOD

ECOD/Domains/e3turB2

e3turB2

UID: 001395595

PDB

Range: B:234-407
PDB: 3TUR chain B(all domains)
UniProt: O53223 (all domains)
Gene: ldtB

Molecule: Mycobacteria Tuberculosis LD-transpeptidase type 2

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

D-Glutamic AcidDGL
drugDrugBank DB02517
Di-mu-iodobis(ethylenediamine)diplatinum(II)0JC
6-CARBOXYLYSINE6CL

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 3TUR RCSB PDB: 3TUR PDBe: 3TUR UniProt: O53223

Downloads

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PLATINUM (II) IONPT

metal

Shown in the structure viewer. Drug annotations from DrugDomain.