ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vzbC2 - ECOD Domain | ECOD

ECOD/Domains/e3vzbC2

e3vzbC2

UID: 001396197

PDB

Range: C:6-145
PDB: 3VZB chain C(all domains)
UniProt: Q9NYA1 (all domains)
Gene: SPHK1

Molecule: Sphingosine kinase 1

3D Structure

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Related Domains

Browse other domains in DAGK_cat →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPhosphofructokinase N-terminal domain(2007.1.4)

FFamilyDAGK_cat(2007.1.4.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00781DAGK_cat

Diacylglycerol kinase catalytic domain

ClanCL0240PFK

External Links

ECOD PDB View: 3VZB RCSB PDB: 3VZB PDBe: 3VZB UniProt: Q9NYA1

Downloads

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