ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3gp6A1 - ECOD Domain | ECOD

ECOD/Domains/e3gp6A1

e3gp6A1

UID: 000139674

PDB

Range: A:0-162
PDB: 3GP6 chain A(all domains)
UniProt: P37001 (all domains)
Gene: pagP

Molecule: Protein pagP

3D Structure

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Related Domains

Browse other domains in PagP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupOMPA-like(5084.1)

TT-groupOMPA-like(5084.1.1)

FFamilyPagP(5084.1.1.7)

Ligands

in contact, ≤ 4 Å

Dodecyl sulfateSDS
drugDrugBank DB03967
Lithium ionLI
metal
(4R)-2-METHYLPENTANE-2,4-DIOL

Pfam Families

Antimicrobial peptide resistance and lipid A acylation protein PagP

ClanCL0193MBB

External Links

ECOD PDB View: 3GP6 RCSB PDB: 3GP6 PDBe: 3GP6 UniProt: P37001

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.