ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mdzB3 - ECOD Domain | ECOD

ECOD/Domains/e4mdzB3

e4mdzB3

UID: 001397060

PDB

Range: B:167-360
PDB: 4MDZ chain B(all domains)
UniProt: C0QQ26 (all domains)
Gene: PERMA_0986

Molecule: Metal dependent phosphohydrolase

3D Structure

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Related Domains

Browse other domains in HD_5 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyHD_5(131.1.1.13)

Ligands

in contact, ≤ 4 Å

Succinic acidSIN
drugDrugBank DB00139
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)C2E

Pfam Families

HD domain

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 4MDZ RCSB PDB: 4MDZ PDBe: 4MDZ UniProt: C0QQ26

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

FE (III) IONFE

metal

Shown in the structure viewer. Drug annotations from DrugDomain.