ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4u0gF1 - ECOD Domain | ECOD

ECOD/Domains/e4u0gF1

e4u0gF1

UID: 001398044

PDB

Range: F:15-210
PDB: 4U0G chain F(all domains)
UniProt: P9WPC3 (all domains)
Gene: clpP2

Molecule: ATP-dependent Clp protease proteolytic subunit 2

3D Structure

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Related Domains

Browse other domains in CLP_protease →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupClpP/crotonase(2486)

HH-groupClpP/crotonase(2486.1)

TT-groupClpP/crotonase(2486.1.1)

FFamilyCLP_protease(2486.1.1.2)

Ligands

in contact, ≤ 4 Å

N-[(benzyloxy)carbonyl]-L-isoleucyl-L-leucineZIL
(2E,5S)-5-methylhept-2-enoic acid39Y
within 5 Å only

+ 2 additives (Dimethyl sulfoxide, Sulfate ion)

Dimethyl sulfoxideDMS

Pfam Families

PF00574CLP_protease

Clp protease

ClanCL0127ClpP_crotonase

External Links

ECOD PDB View: 4U0G RCSB PDB: 4U0G PDBe: 4U0G UniProt: P9WPC3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.