ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2x7jA1 - ECOD Domain | ECOD

ECOD/Domains/e2x7jA1

e2x7jA1

UID: 000139828

PDB

Range: A:2-197
PDB: 2X7J chain A(all domains)
UniProt: P23970 (all domains)
Gene: menD

Molecule: 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE -1-CARBOXYLATE SYNTHASE

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_N(7574.1.1.7)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Thiamine diphosphateTPP

+ 2 additives (1,2-ETHANEDIOL, Sulfate ion)

1,2-ETHANEDIOLEDO

Pfam Families

PF02776TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 2X7J RCSB PDB: 2X7J PDBe: 2X7J UniProt: P23970

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.