ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nvdA2 - ECOD Domain | ECOD

ECOD/Domains/e3nvdA2

e3nvdA2

UID: 000140073

PDB

Range: A:435-642
PDB: 3NVD chain A(all domains)
UniProt: P40406 (all domains)
Gene: nagZ

Molecule: Uncharacterized lipoprotein ybbD

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_3_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupBeta-D-glucan exohydrolase, C-terminal domain(2007.12)

TT-groupBeta-D-glucan exohydrolase, C-terminal domain(2007.12.1)

FFamilyGlyco_hydro_3_C(2007.12.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Tetraethylene glycol)

AcetateACT
DrugBank DB14511
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01915Glyco_hydro_3_C

Glycosyl hydrolase family 3 C-terminal domain

External Links

ECOD PDB View: 3NVD RCSB PDB: 3NVD PDBe: 3NVD UniProt: P40406

Downloads

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