ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3myrA2 - ECOD Domain | ECOD

ECOD/Domains/e3myrA2

e3myrA2

UID: 000140112

PDB

Range: A:3-182
PDB: 3MYR chain A(all domains)
UniProt: D3RV29 (all domains)
Gene: Alvin_2039

Molecule: Hydrogenase (NiFe) small subunit HydA

3D Structure

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Related Domains

Browse other domains in Oxidored_q6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupCheY-like(2007.1.3)

FFamilyOxidored_q6(2007.1.3.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Iron/sulfur clusterSF4

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer.

Pfam Families

PF01058Oxidored_q6

NADH ubiquinone oxidoreductase, 20 Kd subunit

ClanCL0304CheY

External Links

ECOD PDB View: 3MYR RCSB PDB: 3MYR PDBe: 3MYR UniProt: D3RV29

Downloads

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Drug annotations from DrugDomain.