ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v24A2 - ECOD Domain | ECOD

ECOD/Domains/e4v24A2

e4v24A2

UID: 001401476

PDB

Range: A:93-231
PDB: 4V24 chain A(all domains)
UniProt: Q9NYA1 (all domains)
Gene: SPHK1

Molecule: SPHINGOSINE KINASE 1

3D Structure

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Related Domains

Browse other domains in DAGK_cat →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPhosphofructokinase N-terminal domain(2007.1.4)

FFamilyDAGK_cat(2007.1.4.2)

Ligands

in contact, ≤ 4 Å

{(2R)-1-[4-({3-METHYL-5-[(PHENYLSULFONYL)METHYL]PHENOXY}METHYL)BENZYL]PYRROLIDIN-2-YL}METHANOLGYR
within 5 Å only

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

PF00781DAGK_cat

Diacylglycerol kinase catalytic domain

ClanCL0240PFK

External Links

ECOD PDB View: 4V24 RCSB PDB: 4V24 PDBe: 4V24 UniProt: Q9NYA1

Downloads

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Drug annotations from DrugDomain.