ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rh1A1 - ECOD Domain | ECOD

ECOD/Domains/e4rh1A1

e4rh1A1

UID: 001401964

PDB

Range: A:2-341
PDB: 4RH1 chain A(all domains)
UniProt: A4IQU1 (all domains)
Gene: GTNG_2348

Molecule: Spore photoproduct lyase

3D Structure

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Related Domains

Browse other domains in SPL →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilySPL(2002.1.1.195)

Ligands

in contact, ≤ 4 Å

1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione0TT
[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selaniumEEM
Iron/sulfur cluster

Pfam Families

Spore photoproduct lyase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4RH1 RCSB PDB: 4RH1 PDBe: 4RH1 UniProt: A4IQU1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.