ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ritB1 - ECOD Domain | ECOD

ECOD/Domains/e4ritB1

e4ritB1

UID: 001401967

PDB

Range: B:5-365
PDB: 4RIT chain B(all domains)
UniProt: D1C7D8 (all domains)
Gene: Sthe_2364

Molecule: Pyridoxal-dependent decarboxylase

3D Structure

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Related Domains

Browse other domains in Pyridoxal_deC →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyPyridoxal_deC(7577.1.1.4)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Tromethamine, Glycerol)

TromethamineTRS
DrugBank DB03754
GlycerolGOL

Shown in the structure viewer.

Pfam Families

PF00282Pyridoxal_deC

Pyridoxal-dependent decarboxylase conserved domain

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 4RIT RCSB PDB: 4RIT PDBe: 4RIT UniProt: D1C7D8

Downloads

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Drug annotations from DrugDomain.