ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ritA2 - ECOD Domain | ECOD

ECOD/Domains/e4ritA2

e4ritA2

UID: 001401970

PDB

Range: A:5-368
PDB: 4RIT chain A(all domains)
UniProt: D1C7D8 (all domains)
Gene: Sthe_2364

Molecule: Pyridoxal-dependent decarboxylase

3D Structure

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Related Domains

Browse other domains in Pyridoxal_deC →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyPyridoxal_deC(7577.1.1.4)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Glycerin, Tromethamine)

GlycerinGOL
DrugBank DB09462
TromethamineTRS

Pfam Families

PF00282Pyridoxal_deC

Pyridoxal-dependent decarboxylase conserved domain

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 4RIT RCSB PDB: 4RIT PDBe: 4RIT UniProt: D1C7D8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.