ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4w8xA1 - ECOD Domain | ECOD

ECOD/Domains/e4w8xA1

e4w8xA1

UID: 001405128

RepresentativePDB

Range: A:1-202
PDB: 4W8X chain A(all domains)
UniProt: Q8U1S5 (all domains)
Gene: cmr1-1

Molecule: CRISPR system Cmr subunit Cmr1-1

3D Structure

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Related Domains

Browse other domains in RAMPs →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyRAMPs(304.51.1.2)

Ligands

in contact, ≤ 4 Å

Guanosine 3'-monophosphate3GP
drugDrugBank DB03315

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

RAMP superfamily

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 4W8X RCSB PDB: 4W8X PDBe: 4W8X UniProt: Q8U1S5

Downloads

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Drug annotations from DrugDomain.