ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3onpA1 - ECOD Domain | ECOD

ECOD/Domains/e3onpA1

e3onpA1

UID: 000140533

PDB

Range: A:3-163
PDB: 3ONP chain A(all domains)
UniProt: Q3IXX1 (all domains)
Gene: trmJ

Molecule: tRNA/rRNA methyltransferase (SpoU)

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
Chloride ionCL

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 3ONP RCSB PDB: 3ONP PDBe: 3ONP UniProt: Q3IXX1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.