ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rk0D2 - ECOD Domain | ECOD

ECOD/Domains/e4rk0D2

e4rk0D2

UID: 001405637

PDB

Range: D:171-287
PDB: 4RK0 chain D(all domains)
UniProt: Q82ZT5 (all domains)
Gene: EF_2962

Molecule: LacI family sugar-binding transcriptional regulator

3D Structure

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Related Domains

Browse other domains in Peripla_BP_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_3(2007.1.2.10)

Ligands

in contact, ≤ 4 Å

alpha-D-ribofuranoseRIB

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13377Peripla_BP_3

Periplasmic binding protein-like domain

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 4RK0 RCSB PDB: 4RK0 PDBe: 4RK0 UniProt: Q82ZT5

Downloads

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