ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rk1D1 - ECOD Domain | ECOD

ECOD/Domains/e4rk1D1

e4rk1D1

UID: 001405644

PDB

Range: D:167-296
PDB: 4RK1 chain D(all domains)
UniProt: I3TZ89 (all domains)
Gene: rbsR

Molecule: Ribose transcriptional regulator

3D Structure

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Related Domains

Browse other domains in Peripla_BP_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_3(2007.1.2.10)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
alpha-D-ribofuranoseRIB

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13377Peripla_BP_3

Periplasmic binding protein-like domain

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 4RK1 RCSB PDB: 4RK1 PDBe: 4RK1 UniProt: I3TZ89

Downloads

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