ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rn6B1 - ECOD Domain | ECOD

ECOD/Domains/e4rn6B1

e4rn6B1

UID: 001406253

PDB

Range: B:1C-247
PDB: 4RN6 chain B(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: Thrombin heavy chain

3D Structure

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Related Domains

Browse other domains in Trypsin,Thrombin_light →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyTrypsin,Thrombin_light(1.1.5.2)

Ligands

in contact, ≤ 4 Å

(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylicacid15U

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

PF09396Thrombin_light

Thrombin light chain

External Links

ECOD PDB View: 4RN6 RCSB PDB: 4RN6 PDBe: 4RN6 UniProt: P00734

Downloads

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