ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rn7A1 - ECOD Domain | ECOD

ECOD/Domains/e4rn7A1

e4rn7A1

UID: 001406254

PDB

Range: A:114-299
PDB: 4RN7 chain A(all domains)
UniProt: Q183J9 (all domains)
Gene: CD630_27610

Molecule: N-acetylmuramoyl-L-alanine amidase

3D Structure

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Related Domains

Browse other domains in Amidase_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyAmidase_3(2011.1.1.5)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 3 additives (HEPES, Formic acid, Glycerin)

HEPESEPE
DrugBank DB16872
Formic acid

Pfam Families

PF01520Amidase_3

N-acetylmuramoyl-L-alanine amidase

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 4RN7 RCSB PDB: 4RN7 PDBe: 4RN7 UniProt: Q183J9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01942

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.