ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4d05B1 - ECOD Domain | ECOD

ECOD/Domains/e4d05B1

e4d05B1

UID: 001406657

PDB

Range: B:177-255
PDB: 4D05 chain B(all domains)
UniProt: A0A0A6YVN6 (all domains)

Molecule: ATP-DEPENDENT DNA LIGASE

3D Structure

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Related Domains

Browse other domains in DNA_ligase_OB_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyDNA_ligase_OB_2(2.1.1.65)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14743DNA_ligase_OB_2

DNA ligase OB-like domain

ClanCL0021OB

External Links

ECOD PDB View: 4D05 RCSB PDB: 4D05 PDBe: 4D05 UniProt: A0A0A6YVN6

Downloads

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