ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4d05B2 - ECOD Domain | ECOD

ECOD/Domains/e4d05B2

e4d05B2

UID: 001406658

PDB

Range: B:5-176
PDB: 4D05 chain B(all domains)
UniProt: A0A0A6YVN6 (all domains)

Molecule: ATP-DEPENDENT DNA LIGASE

3D Structure

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Related Domains

Browse other domains in DNA_ligase_A_M →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDNA_ligase_A_M(206.1.3.1)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Pfam Families

PF01068DNA_ligase_A_M

ATP dependent DNA ligase domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 4D05 RCSB PDB: 4D05 PDBe: 4D05 UniProt: A0A0A6YVN6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.