ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wktC1 - ECOD Domain | ECOD

ECOD/Domains/e4wktC1

e4wktC1

UID: 001407116

PDB

Range: C:217-764
PDB: 4WKT chain C(all domains)
UniProt: Q9I194 (all domains)
Gene: pvdQ

Molecule: Acyl-homoserine lactone acylase PvdQ

3D Structure

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Related Domains

Browse other domains in Penicil_amidase →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupPenicillin acylase, catalytic domain(210.1.2)

FFamilyPenicil_amidase(210.1.2.1)

Ligands

in contact, ≤ 4 Å

1-Butane Boronic AcidBUB
drugDrugBank DB02664

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF01804Penicil_amidase

Penicillin amidase

ClanCL0052NTN

External Links

ECOD PDB View: 4WKT RCSB PDB: 4WKT PDBe: 4WKT UniProt: Q9I194

Downloads

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Drug annotations from DrugDomain.