ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rdqA1 - ECOD Domain | ECOD

ECOD/Domains/e4rdqA1

e4rdqA1

UID: 001407183

RepresentativePDB

Range: A:2-367
PDB: 4RDQ chain A(all domains)
UniProt: E1C3A0 (all domains)

Molecule: Bestrophin-1

3D Structure

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Related Domains

Browse other domains in Bestrophin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBestrophin(6164)

HH-groupBestrophin(6164.1)

TT-groupBestrophin(6164.1.1)

FFamilyBestrophin(6164.1.1.1)

Ligands

in contact, ≤ 4 Å

6-cyclohexyl-2-(4-cyclohexylbutyl)-2-({[4-O-(alpha-D-glucopyranosyl)-beta-D-glucopyranosyl]oxy}methyl)hexyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosideC6N
Calcium ionCA
metal
Chloride ionCL

Pfam Families

PF01062Bestrophin

Bestrophin, RFP-TM, chloride channel

ClanCL0897Bestrophin

External Links

ECOD PDB View: 4RDQ RCSB PDB: 4RDQ PDBe: 4RDQ UniProt: E1C3A0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Potassium ionK

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.