ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1y44B2 - ECOD Domain | ECOD

ECOD/Domains/e1y44B2

e1y44B2

UID: 001409047

PDB

Range: B:1-307
PDB: 1Y44 chain B(all domains)
UniProt: P54548 (all domains)
Gene: rnz

Molecule: Ribonuclease Z

3D Structure

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Related Domains

Browse other domains in Lactamase_B_2, Anti-Pycsar_Apyc1 →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B_2, Anti-Pycsar_Apyc1(247.1.1.29)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid)

GlycerinGOL
DrugBank DB09462
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

PF12706Lactamase_B_2

Beta-lactamase superfamily domain

ClanCL0381Metallo-HOrase

PF23023Anti-Pycsar_Apyc1

Anti-Pycsar protein Apyc1

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 1Y44 RCSB PDB: 1Y44 PDBe: 1Y44 UniProt: P54548

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.