ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vnpB1 - ECOD Domain | ECOD

ECOD/Domains/e2vnpB1

e2vnpB1

UID: 001411135

PDB

Range: B:4-183
PDB: 2VNP chain B(all domains)
UniProt: Q46822 (all domains)
Gene: idi

Molecule: ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE

3D Structure

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Related Domains

Browse other domains in NUDIX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX(221.4.1.1)

Ligands

in contact, ≤ 4 Å

2-Dimethylamino-Ethyl-DiphosphateDED
drugDrugBank DB03165
Magnesium ionMG
metal
MANGANESE (II) ION

Pfam Families

NUDIX domain

ClanCL0261NUDIX

External Links

ECOD PDB View: 2VNP RCSB PDB: 2VNP PDBe: 2VNP UniProt: Q46822

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.