ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ojvA1 - ECOD Domain | ECOD

ECOD/Domains/e4ojvA1

e4ojvA1

UID: 001412590

RepresentativePDB

Range: A:1-369
PDB: 4OJV chain A(all domains)
UniProt: P22434 (all domains)
Gene: PDE1

Molecule: 3',5'-cyclic-nucleotide phosphodiesterase 1

3D Structure

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Related Domains

Browse other domains in PDEase_II →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyPDEase_II(247.1.1.7)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ion

Pfam Families

PF02112PDEase_II

cAMP phosphodiesterases class-II

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 4OJV RCSB PDB: 4OJV PDBe: 4OJV UniProt: P22434

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.