ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4aycB1 - ECOD Domain | ECOD

ECOD/Domains/e4aycB1

e4aycB1

UID: 001413705

PDB

Range: B:359-485
PDB: 4AYC chain B(all domains)
UniProt: O76064 (all domains)
Gene: RNF8

Molecule: E3 UBIQUITIN-PROTEIN LIGASE RNF8

3D Structure

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Related Domains

Browse other domains in zf-C3HC4_3 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-C3HC4_3(376.1.1.22)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

PF13920zf-C3HC4_3

Zinc finger, C3HC4 type (RING finger)

ClanCL0229RING

External Links

ECOD PDB View: 4AYC RCSB PDB: 4AYC PDBe: 4AYC UniProt: O76064

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.