ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3oq2A1 - ECOD Domain | ECOD

ECOD/Domains/e3oq2A1

e3oq2A1

UID: 000141832

PDB

Range: A:4-102
PDB: 3OQ2 chain A(all domains)
UniProt: Q72WF4 (all domains)
Gene: cas2

Molecule: CRISPR-associated protein Cas2

3D Structure

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Related Domains

Browse other domains in CRISPR_Cas2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR associated protein Cas2-like(304.56)

TT-groupCRISPR associated protein Cas2-like(304.56.1)

FFamilyCRISPR_Cas2(304.56.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

+ 3 additives (Citric acid, Sulfate ion, Tromethamine)

Citric acidCIT

Pfam Families

PF09827CRISPR_Cas2

CRISPR associated protein Cas2

ClanCL0728Cas2

External Links

ECOD PDB View: 3OQ2 RCSB PDB: 3OQ2 PDBe: 3OQ2 UniProt: Q72WF4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB04272

Sulfate ionSO4

DrugBank DB14546

TromethamineTRS

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.